XLRanker

XLRanker is a tool to rank and prioritize protein to protein cross linking data. The tool uses parsimonious selection as well as an XGBoost model to select the best protein pairs to represent ambiguous peptides.

Installation

You can install xlranker using pip:

pip install xlranker

Usage

To analyze a TSV file containing a network of peptide sequences run:

xlranker start peptide_network.tsv

More details about the method and usage instructions can be found in Usage

Example Notebook

For a quick start, you can check out the example notebook in the notebooks directory or launch a google colab notebook to see how to use the package interactively.